PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 201aa    MW: 20849.3 Da    PI: 10.7147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001354.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.2e-072480653
                HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIks 53
                + +Er+RR+++N  +++L +l+   +s        + + + ++  + Le+A  YI++
  Do001354.1 24 KTVERNRRNQMNALYSRLDSLVRAgSSpssappavQRGLPAMTRPDRLEEAAAYIRQ 80
                679*********************666999999955555559999**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5621881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-72397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.25E-72496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-42580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDMPPPPPPF GGPGGAGGGK PDRKTVERNR RNQMNALYSR LDSLVRAGSS PSSAPPAVQR  60
GLPAMTRPDR LEEAAAYIRQ TTERVERLKE RKRELTAARA GSSSQGSGSG SGSSSAAGAT  120
EVEVQHLGSG LHAILVAGAP PSDGASFHRA VRAVEEAGGE VQNAHFSVVG ARAVYTIHTL  180
VAEGGIERVV QRLKAALRGD A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954617.24e-97PREDICTED: uncharacterized protein LOC101774908
TrEMBLK3Z1164e-97K3Z116_SETIT; Uncharacterized protein
STRINGSi020234m1e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-11bHLH family protein